Dear PLS experts,
Dear PLS experts,
Thanks for the insightful post. Please keep in mind that all the analyses you have done are looking at within-subjects effects, which includes the confidence intervals around the brain scores without doing the differneces. The current version of PLS does not do the difference assessment that you did mainly because the permutation test is assessing that as well - though based on null hypothesis testing rather the reliability (which is what the CI calculation is for). If you want use bootstrap to assess the overall differences, then what you did is legitimate.
I am hoping we will be able to get the whole PLS framework updated by the year's end, so if you think this additional feature would be helpful, we can include it.
thanks
Randy
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