Useful Links & Resources

Learning Resources

General knowledge

Online Textbook (The Basics of MRI)

Artifact Reference (MRI Atifacts)

Cross-Platform Acronym Reference

Brain Anatomy Reference, (1), (2)

WIPs Presentation

MRI Tutorials

http://www.revisemri.com/

http://practicalfmri.blogspot.ca/

http://www.imaios.com/en/e-Courses/e-MRI

Anatomy & Atlases

Talairach applet

Inner brain anatomy

Neurovascular atlas

MRI Protocols

Multiband protocols

Tools

CONN (functional connectivity toolbox)

FSL/Python resting-state connectivity pipeline

PHLEM (Physiological Log Extraction for Modeling)

BRAVO (Bootstrap Regression Analysis of Voxelwise Observations)

CPAC

FSL phase image unwrapping (FUGUE & PRELUDE)

FSL dual-echo ASL toolbox

UPenn perfusion toolbox

TRACULA (FreeSurfer Tracts Constrained by Underlying Anatomy) tractography

Documentation

fMRI using the 32-channel head coil

Fast clinical imaging protocols on the 32-channel coil

Applications of diffusion tensor imaging